SNAP¶
Description¶
SNAP is a fast and accurate aligner for short DNA reads. It is optimized for modern read lengths of 100 bases or higher, and takes advantage of these reads to align data quickly through a hash-based indexing scheme. It also includes support for sorting, marking duplicates and indexing its results, eliminating the need for several pipeline stages used by other aligners. This modulryollowing environment variables: * HCP_SNAP_BIN - executable directory
Environment Modules¶
Run module spider snap
to find out what environment modules are available for this application.
Environment Variables¶
- HPC_SNAP_DIR - installation directory
Citation¶
If you publish research that uses snap you have to cite it as follows:
Categories¶
biology, sequencing