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SNAP

Description

snap website

SNAP is a general purpose gene finding program suitable for both eukaryotic and prokaryotic genomes. SNAP is an acroynm for Semi-HMM-based Nucleic Acid Parser.

Environment Modules

Run module spider snap to find out what environment modules are available for this application.

Environment Variables

  • HPC_SNAP_DIR - installation directory
  • ZOE - Zoe directory

Citation

If you publish research that uses snap you have to cite it as follows:

Faster and More Accurate Sequence Alignment with SNAP. Matei Zaharia, William J. Bolosky, Kristal Curtis, Armando Fox, David Patterson, Scott Shenker, Ion Stoica, Richard M. Karp, and Taylor Sittler. arXiv:1111.5572v1, November 2011. < https://doi.org/10.48550/arXiv.1111.5572>

William J. Bolosky, Arun Subramaniyan, Matei Zaharia, Ravi Pandya, Taylor Sittler, and David Patterson. BioRxiv, November 2021. https://doi.org/10.1101/2021.11.23.469039

Categories

biology, sequencing