Snakemake

Description

snakemake website

The Snakemake workflow management system is a tool to create reproducible and scalable data analyses. Workflows are described via a human readable, Python based language. They can be seamlessly scaled to server, cluster, grid and cloud environments, without the need to modify the workflow definition. Finally, Snakemake workflows can entail a description of required software, which will be automatically deployed to any execution environment.

Environment Modules

Run module spider snakemake to find out what environment modules are available for this application.

Environment Variables

• HPC_SNAKEMAKE_DIR - installation directory
• HPC_SNAKEMAKE_BIN - executable directory

Categories

biology, workflow_automation