SimSeq¶

Description¶

An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina data as possible. Some of these quirks include the potential for chimeric reads, and non-biotinylated fragment pull down in mate-pair libraries. Note: export _JAVA_OPTIONS="-Xmx?g" where ? equals to the available memory.

Environment Modules¶

Run module spider simseq to find out what environment modules are available for this application.

Environment Variables¶

HPC_SIMSEQ_DIR - installation directory
HPC_SIMSEQ_BIN - executable directory

Categories¶

biology, ngs, phylogenetics