SiLiX¶

Description¶

The software package SiLiX (SIngle LInkage Clustering of Sequences) implements a new algorithm for the clustering of homologous sequences, based on single transitive links (single linkage) with alignment coverage constraints.

Environment Modules¶

Run module spider silix to find out what environment modules are available for this application.

Environment Variables¶

HPC_SILIX_DIR - installation directory
HPC_SILIX_BIN - executable directory
HPC_SILIX_MAN - manual directory

Citation¶

If you publish research that uses silix you have to cite it as follows:

Miele, V., Penel, S., & Duret, L. (2011). Ultra-fast sequence clustering from similarity networks with SiLiX. BMC Bioinformatics, 12, 116. https://doi.org/10.1186/1471-2105-12-116

Categories¶

phylogenetics