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SHEsisPlus

Description

shesisplus website

SHEsisPlus is a software package for analysis of genetic association, Hardy-weinberg equilibrium, linkage disequilibrium and haplotype construction at multiallelic polymorphism loci, compatible for both diploid and polyploid species.

Environment Modules

Run module spider shesisplus to find out what environment modules are available for this application.

Environment Variables

  • HPC_SHESISPLUS_DIR - installation directory
  • HPC_SHESISPLUS_BIN - executable directory

Citation

If you publish research that uses shesisplus you have to cite it as follows:

Neigenfind, J., Gyetvai, G., Basekow, R., Diehl, S., Achenbach, U., Gebhardt, C., Selbig, J., & Kersten, B. (2008). Haplotype inference from unphased SNP data in heterozygous polyploids based on SAT. BMC Genomics, 9, 356. https://doi.org/10.1186/1471-2164-9-356

Purcell, S., Neale, B., Todd-Brown, K., Thomas, L., Ferreira, M. A., Bender, D., Maller, J., Sklar, P., de Bakker, P. I., Daly, M. J., & Sham, P. C. (2007). PLINK: a tool set for whole-genome association and population-based linkage analyses. American Journal of Human Genetics, 81(3), 559-575. https://doi.org/10.1086/519795

Hedrick, P. W. (1987). Gametic disequilibrium measures: proceed with caution. Genetics, 117(2), 331-341. https://doi.org/10.1093/genetics/117.2.331

Categories

biology, genomics