SHAPEIT¶
Description¶
SHAPEIT is a fast and accurate method for estimation of haplotypes (aka phasing) from genotype or sequencing data.
Environment Modules¶
Run module spider shapeit to find out what environment modules are available for this application.
Environment Variables¶
- HPC_SHAPEIT_DIR - installation directory
- HPC_SHAPEIT_BIN - executable directory
- HPC_SHAPEIT_EXE - example directory
Citation¶
If you publish research that uses shapeit you have to cite it as follows:
Delaneau, O., Marchini, J., & Zagury, J. F. (2012). A linear complexity phasing method for thousands of genomes. Nature Methods, 9(2), 179-181. https://doi.org/10.1038/nmeth.1785
Categories¶
biology, variant_calling