SHAPEIT¶
Description¶
SHAPEIT is a fast and accurate method for estimation of haplotypes (aka phasing) from genotype or sequencing data.
Environment Modules¶
Run module spider shapeit to find out what environment modules are available for this application.
Environment Variables¶
- HPC_SHAPEIT_DIR - installation directory
- HPC_SHAPEIT_BIN - executable directory
Citation¶
If you publish research that uses shapeit you have to cite it as follows:
https://mathgen.stats.ox.ac.uk/genetics_software/shapeit/shapeit.html#citations
Categories¶
biology, variant_calling