SeqyClean¶

Description¶

Raw data from sequencing machines is not usually completely prepared for analysis since se- quences often contain remnants of nucleotides that have been used during DNA library preparation. Such nucleotides can potentially case hurdles during data analysis and hereby need to be removed. In additional, the noise, which is presented as low-quality bases, has serious impact on genome as- sembly and mapping. We propose SeqyClean, a specialized cleaning pipeline that alleviates these issues.

Environment Modules¶

Run module spider seqyclean to find out what environment modules are available for this application.

Environment Variables¶

HPC_SEQYCLEAN_DIR - installation directory
HPC_SEQYCLEAN_BIN - executable directory
HPC_SEQYCLEAN_OBJ - obj directory

Categories¶

biology, ngs, sequencing