SEQuel¶

Description¶

SEQuel is a tool for correcting errors (i.e., insertions, deletions, and substitutions) in contigs output from assembly. While assemblies of next generation sequencing (NGS) data are accurate, they still contain a substantial number of errors that need to be corrected after the assembly process. The algorithm behind SEQuel makes use of a graph structure called the positional de Bruijn graph, which models k-mers within reads while incorporating their approximate positions into the model.

Environment Modules¶

Run module spider sequel to find out what environment modules are available for this application.

Environment Variables¶

HPC_SEQUEL_DIR - Installation directory
HPC_SEQUEL_BIN - Executable directory

Categories¶

biology, ngs