seqtk

Description

seqtk website

Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. It seamlessly parses both FASTA and FASTQ files which can also be optionally compressed by gzip. Tabtk is a tool for processing TAB/SPACE-delimited data (examples at the end of this page). The toolkit consists of three programs - seqtk, tabtk, and trimadapt.

Environment Modules

Run module spider seqtk to find out what environment modules are available for this application.

Environment Variables

• HPC_SEQTK_DIR - installation directory
• HPC_SEQTK_BIN - executable directory

Categories

biology, genomics, ngs