seqmule¶

Description¶

SeqMule takes single-end or paird-end FASTQ or BAM files, generates a script consisting of more than 10 popular alignment, analysis tools and runs the script line by line.

Environment Modules¶

Run module spider seqmule to find out what environment modules are available for this application.

Environment Variables¶

HPC_SEQMULE_DIR - installation directory
HPC_SEQMULE_BIN - executable directory

Citation¶

If you publish research that uses seqmule you have to cite it as follows:

Guo Y, Ding X, Shen Y, Lyon GJ, Wang K. SeqMule: automated human exome/genome variants detection. Scientific Reports, doi: 10.1038/srep14283, 2015

Categories¶

biology, sequencing