seq_crumbs¶

Description¶

seq_crumbs aims to be a collection of small sequence processing utilities. seq_crumbs is modeled after the Unix command line text processing utilities so every utility tries to perform a specific task and most of them take a sequence file as input and create a new processed sequence file as output. This design encourages the assembly of the seq_crumbs utilities with Unix pipes to create complex pipelines. There are already other similar software that uses this approach like fastx and biopieces.

Environment Modules¶

Run module spider seq_crumbs to find out what environment modules are available for this application.

Environment Variables¶

HPC_SEQ_CRUMBS_DIR - installation directory
HPC_SEQ_CRUMBS_BIN - executable directory

Categories¶

biology, sequencing, genomics, utility