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SEPP

Description

sepp website

This module includes SEPP, TIPP and UPP. SEPP stands for "SATe-enabled Phylogenetic Placement", and addresses the problem of phylogenetic placement of short reads into reference alignments and trees. TIPP stands for "Taxonomic Identification and Phylogenetic Profiling", and addresses the problem of taxonomic identification and abundance profiling of metagenomic data. UPP stands for "Ultra-large alignments using Phylogeny-aware Profiles", and addresses the problem of alignment of very large datasets, potentially containing fragmentary data. UPP can align datasets with up to 1,000,000 sequences.

Environment Modules

Run module spider sepp to find out what environment modules are available for this application.

Environment Variables

  • HPC_SEPP_DIR - installation directory
  • HPC_SEPP_BIN - executable directory
  • HPC_SEPP_CONF - config directory

Categories

biology, phylogenetics