Scythe¶

Description¶

Scythe uses a Naive Bayesian approach to classify contaminant substrings in sequence reads. It considers quality information, which can make it robust in picking out 3'-end adapters, which often include poor quality bases.

Environment Modules¶

Run module spider scythe to find out what environment modules are available for this application.

Environment Variables¶

HPC_SCYTHE_DIR
HPC_SCYTHE_BIN
HPC_SCYTHE_DOC

Categories¶

biology, ngs