SCRIPTURE¶
Description¶
Scripture is a method for transcriptome reconstruction that relies solely on RNA-Seq reads and an assembled genome to build a transcriptome ab initio. The statistical methods to estimate read coverage significance are also applicable to other sequencing data. Scripture also has modules for ChIP-Seq peak calling. Note: export _JAVA_OPTIONS="-Xmx?g" where ? equals to the available memory.
Environment Modules¶
Run module spider scripture to find out what environment modules are available for this application.
Environment Variables¶
- HPC_SCRIPTURE_DIR - installation directory
- HPC_SCRIPTURE_BIN - executable directory
- HPC_SCRIPTURE_LIB - library directory
Citation¶
If you publish research that uses scripture you have to cite it as follows:
Categories¶
biology, genomics