Scoary¶
Description¶
Scoary is designed to take the gene_presence_absence.csv file from Roary as well as a traits file created by the user and calculate the assocations between all genes in the accessory genome and the traits. It reports a list of genes sorted by strength of association per trait.
Environment Modules¶
Run module spider scoary to find out what environment modules are available for this application.
Environment Variables¶
- HPC_SCOARY_DIR - installation directory
- HPC_SCOARY_BIN - executable directory
Citation¶
If you publish research that uses scoary you have to cite it as follows:
Categories¶
phylogenetics