scapp

Description

scapp website

SCAPP assembles plasmids from metagenomic assembly graphs.

Environment Modules

Run module spider scapp to find out what environment modules are available for this application.

Environment Variables

• HPC_SCAPP_DIR - installation directory
• HPC_SCAPP_BIN - executable directory

Citation

If you publish research that uses scapp you have to cite it as follows:

Pellow, D., Zorea, A., Probst, M. et al. SCAPP: an algorithm for improved plasmid assembly in metagenomes. Microbiome 9, 144 (2021).

Categories

genomics, assembly