scapp¶
Description¶
SCAPP assembles plasmids from metagenomic assembly graphs.
Environment Modules¶
Run module spider scapp to find out what environment modules are available for this application.
Environment Variables¶
- HPC_SCAPP_DIR - installation directory
- HPC_SCAPP_BIN - executable directory
Citation¶
If you publish research that uses scapp you have to cite it as follows:
Pellow, D., Zorea, A., Probst, M. et al. SCAPP: an algorithm for improved plasmid assembly in metagenomes. Microbiome 9, 144 (2021). https://doi.org/10.1186/s40168-021-01068-z
Categories¶
genomics, assembly