scanpy¶

Description¶

Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, trajectory inference and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells.

Environment Modules¶

Run module spider scanpy to find out what environment modules are available for this application.

Environment Variables¶

HPC_SCANPY_DIR
HPC_SCANPY_BIN

Categories¶

biology