Scalpel¶

Description¶

Bioinformatics pipeline for discovery of genetic variants from NGS reads. Features: * Support Illumina reads * Detect mutations in one exome * Detect denovo mutation in one family * Detect somatic mutations in tumor/normal pair

Environment Modules¶

Run module spider scalpel to find out what environment modules are available for this application.

Environment Variables¶

HPC_SCALPEL_DIR - installation directory

Categories¶

biology, ngs