Sate¶

Description¶

SATé is a software package for inferring a sequence alignment and phylogenetic tree. The iterative algorithm involves repeated alignment and tree searching operations. The original data set is divided into smaller subproblems by a tree-based decomposition. These subproblems are aligned and further merged for phylogenetic tree inference. The original style of SATé was described in Liu et al. 2009. The version posted here is enables the SATé-II searching described in Liu et al. 2012.

Environment Modules¶

Run module spider sate to find out what environment modules are available for this application.

Environment Variables¶

HPC_SATE_DIR - installation directory
HPC_SATE_BIN - executable directory

Categories¶

biology, phylogenetics