SALSA¶
Description¶
SALSA: A tool to scaffold long read assemblies with Hi-C data. This tool is sponsored by Pacific Biosciences.
Environment Modules¶
Run module spider salsa to find out what environment modules are available for this application.
Environment Variables¶
- HPC_SALSA_DIR - installation directory
Citation¶
If you publish research that uses salsa you have to cite it as follows:
Ghurye, J., Pop, M., Koren, S., Bickhart, D., & Chin, C. S. (2017). Scaffolding of long read assemblies using long range contact information. BMC genomics, 18(1), 527. link.
Categories¶
biology, ngs