saige¶
Description¶
SAIGE is an R package developed with Rcpp for genome-wide association tests in large-scale data sets and biobanks.
Environment Modules¶
Run module spider saige to find out what environment modules are available for this application.
Environment Variables¶
- HPC_SAIGE_DIR - installation directory
- HPC_SAIGE_BIN - executable directory
Citation¶
If you publish research that uses saige you have to cite it as follows:
The SAIGE manuscript: Wei Zhou, Jonas B. Nielsen, Lars G. Fritsche, Maiken B. Elvestad, Brooke Wolford, Maoxuan Lin, Kristian Hveem, Hyun Min Kang, Goncalo R. Abecasis, Cristen J. Willer, Seunggeun Lee “Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.” Nature Genetics 50, 1335–1341 (2018)
Categories¶
genomics