saige¶
Description¶
SAIGE is an R package developed with Rcpp for genome-wide association tests in large-scale data sets and biobanks.
Environment Modules¶
Run module spider saige to find out what environment modules are available for this application.
Environment Variables¶
- HPC_SAIGE_DIR - installation directory
- HPC_SAIGE_BIN - executable directory
Citation¶
If you publish research that uses saige you have to cite it as follows:
Zhou, W., Nielsen, J. B., Fritsche, L. G., Elvestad, M. B., Wolford, B., Lin, M., Hveem, K., Kang, H. M., Abecasis, G. R., Willer, C. J., & Lee, S. (2018). Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies. Nature Genetics, 50(9), 1335-1341. https://doi.org/10.1038/s41588-018-0184-y
Categories¶
genomics