Sabre¶

Description¶

Next-generation sequencing can currently produce hundreds of millions of reads per lane of sample and that number increases at a dizzying rate. Barcoding individual sequences for multiple lines or multiple species is a cost-efficient method to sequence and analyze a broad range of data. Sabre is a tool that will demultiplex barcoded reads into separate files. It will work on both single-end and paired-end data in fastq format. It simply compares the provided barcodes with each read and separates the read into its appropriate barcode file, after stripping the barcode from the read (and also stripping the quality values of the barcode bases). If a read does not have a recognized barcode, then it is put into the unknown file.

Environment Modules¶

Run module spider sabre to find out what environment modules are available for this application.

Environment Variables¶

HPC_SABRE_DIR - installation directory
HPC_SABRE_BIN - executable directory

Categories¶

phylogenetics