Roary¶

Description¶

Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format and calculates the pan genome. Roary is no intended for meta-genomics or for comparing extremely diverse sets of genomes.

Environment Modules¶

Run module spider roary to find out what environment modules are available for this application.

Environment Variables¶

HPC_ROARY_DIR - installation directory
HPC_ROARY_BIN - executable directory

Citation¶

If you publish research that uses roary you have to cite it as follows:

Andrew J. Page, Carla A. Cummins, Martin Hunt, Vanessa K. Wong, Sandra Reuter, Matthew T. G. Holden, Maria Fookes, Daniel Falush, Jacqueline A. Keane, Julian Parkhill (2015), "Roary: Rapid large-scale prokaryote pan genome analysis", Bioinformatics

Categories¶

biology, genomics