Roary¶

Description¶

Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format and calculates the pan genome. Roary is no intended for meta-genomics or for comparing extremely diverse sets of genomes.

Environment Modules¶

Run module spider roary to find out what environment modules are available for this application.

Environment Variables¶

HPC_ROARY_DIR - installation directory
HPC_ROARY_BIN - executable directory

Citation¶

If you publish research that uses roary you have to cite it as follows:

Page, A. J., Cummins, C. A., Hunt, M., Wong, V. K., Reuter, S., Holden, M. T. G., Fookes, M., Falush, D., Keane, J. A., & Parkhill, J. (2015). Roary: rapid large-scale prokaryote pan genome analysis. Bioinformatics, 31(22), 3691-3693. https://doi.org/10.1093/bioinformatics/btv421

Categories¶

biology, genomics