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rnaQUAST

Description

rnaquast website

rnaQUAST is a tool for evaluating quality of transcriptome assemblies using reference genome and gene database.

Environment Modules

Run module spider rnaquast to find out what environment modules are available for this application.

Environment Variables

  • HPC_RNAQUAST_DIR - installation directory
  • HPC_RNAQUAST_BIN - executable directory

Citation

If you publish research that uses rnaquast you have to cite it as follows:

http://spades.bioinf.spbau.ru/rnaquast/release1.2.0/manual.html#sec5

Categories

biology, ngs, sequencing, rna-seq