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rnabloom

Description

rnabloom website

RNA-Bloom is a fast and memory-efficient de novo transcript sequence assembler. It is designed for the following sequencing data types: single-end/paired-end bulk RNA-seq (strand-specific/agnostic) paired-end single-cell RNA-seq (strand-specific/agnostic) long-read RNA-seq (ONT cDNA/direct RNA, PacBio cDNA

Environment Modules

Run module spider rnabloom to find out what environment modules are available for this application.

Environment Variables

  • HPC_RNABLOOM_DIR - installation directory
  • HPC_RNABLOOM_BIN - executable directory

Categories

biology, ngs, sequencing, rna-seq