RiboTaper¶

Description¶

RiboTaper is a new analysis pipeline for Ribosome Profiling (Ribo-seq) experiments, which exploits the triplet periodicity of ribosomal footprints to call translated regions.

Environment Modules¶

Run module spider ribotaper to find out what environment modules are available for this application.

Environment Variables¶

HPC_RIBOTAPER_DIR - installation directory
HPC_RIBOTAPER_BIN - executable directory

Citation¶

If you publish research that uses REPLACE you have to cite it as follows:

L.Calviello, N. Mukherjee, E. Wyler, H. Zauber, A. Hirsekorn, M. Selbach, M. Landthaler, B.Obermayer, U. Ohler(2016): Detecting actively translated open reading frames in ribosome profiling data Nature methods

Categories¶

phylogenetics