ribodetector¶

Description¶

RiboDetector is a software developed to accurately yet rapidly detect and remove rRNA sequences from metagenomeic, metatranscriptomic, and ncRNA sequencing data. It was developed based on LSTMs and optimized for both GPU and CPU usage to achieve a 10 times on CPU and 50 times on a consumer GPU faster runtime compared to the current state-of-the-art software. Moreover, it is very accurate, with ~10 times fewer false classifications. Finally, it has a low level of bias towards any GO functional groups.

Environment Modules¶

Run module spider ribodetector to find out what environment modules are available for this application.

Environment Variables¶

HPC_RIBODETECTOR_DIR - installation directory
HPC_RIBODETECTOR_BIN - executable directory

Categories¶

biology