ResFinder¶
Description¶
ResFinder identifies acquired antimicrobial resistance genes in total or partial sequenced isolates of bacteria.
Environment Modules¶
Run module spider resfinder to find out what environment modules are available for this application.
Environment Variables¶
- HPC_RESFINDER_DIR - installation directory
- HPC_RESFINDER_BIN - executable directory
Citation¶
If you publish research that uses resfinder you have to cite it as follows:
ResFinder 4.0 for predictions of phenotypes from genotypes. Bortolaia V, Kaas RF, Ruppe E, Roberts MC, Schwarz S, Cattoir V, Philippon A, Allesoe RL, Rebelo AR, Florensa AR, Fagelhauer L, Chakraborty T, Neumann B, Werner G, Bender JK, Stingl K, Nguyen M, Coppens J, Xavier BB, Malhotra-Kumar S, Westh H, Pinholt M, Anjum MF, Duggett NA, Kempf I, Nyk�senoja S, Olkkola S, Wieczorek K, Amaro A, Clemente L, Mossong J, Losch S, Ragimbeau C, Lund O, Aarestrup FM. Journal of Antimicrobial Chemotherapy. 2020 Aug 11. PMID: 32780112 doi: 10.1093/jac/dkaa345 [Epub ahead of print]
Categories¶
biology, genomics