ResFinder¶
Description¶
ResFinder identifies acquired antimicrobial resistance genes in total or partial sequenced isolates of bacteria.
Environment Modules¶
Run module spider resfinder to find out what environment modules are available for this application.
Environment Variables¶
- HPC_RESFINDER_DIR - installation directory
- HPC_RESFINDER_BIN - executable directory
Citation¶
If you publish research that uses resfinder you have to cite it as follows:
Bortolaia, V., Kaas, R. F., Ruppe, E., Roberts, M. C., Schwarz, S., Cattoir, V., Philippon, A., Allesoe, R. L., Rebelo, A. R., Florensa, A. R., Fagelhauer, L., Chakraborty, T., Neumann, B., Werner, G., Bender, J. K., Stingl, K., Nguyen, M., Coppens, J., Xavier, B. B., Malhotra-Kumar, S., Westh, H., Pinholt, M., Anjum, M. F., Duggett, N. A., Kempf, I., Nykasenoja, S., Olkkola, S., Wieczorek, K., Amaro, A., Clemente, L., Mossong, J., Losch, S., Ragimbeau, C., Lund, O., Aarestrup, F. M. (2020). ResFinder 4.0 for predictions of phenotypes from genotypes. Journal of Antimicrobial Chemotherapy, 75(12), 3491-3500. https://doi.org/10.1093/jac/dkaa345
Categories¶
biology, genomics