RepeatExplorer¶

Description¶

RepeatExplorer is a computational pipeline for discovery and characterization of repetitive sequences in eukaryotic genomes. The pipeline uses high-throughput genome sequencing data as an input and performs graph-based clustering analysis of sequence read similarities to identify repetitive elements within analyzed samples. The analysis principles were described in Novak et al. (2010).

Environment Modules¶

Run module spider repeatexplorer to find out what environment modules are available for this application.

Environment Variables¶

HPC_REPEATEXPLORER_DIR - installation directory

Categories¶

biology, ngs