RepeatAnalysisTools

Description

repeatanalysistools website

This repository contains instructions for processing and repeat analysis of sequence data generated with the PacBio No-Amp Targeted Sequencing Protocol with simplified double Cas9 cut. UPDATE: RepeatAnalysis Tools in this repository now use Python 3. Outputs from the analysis scripts include high-accuracy (>=QV20) CCS sequences for target regions so that users can easily analyze the results with other third party tools as necessary.

Environment Modules

Run module spider repeatanalysistools to find out what environment modules are available for this application.

Environment Variables

• HPC_RATOOLS_DIR - installation directory
• HPC_RATOOLS_BIN - executable directory

Categories

biology, genomics, sequencing, utility