REPdenovo¶
Description¶
REPdenovo is designed for constructing repeats directly from sequence reads. It based on the idea of frequent k-mer assembly. REPdenovo provides many functionalities, and can generate much longer repeats than existing tools. The overall pipeline is shown in the mannual file. REPdenovo supports the following main functionalities.
Environment Modules¶
Run module spider repdenovo to find out what environment modules are available for this application.
Environment Variables¶
- HPC_REPDENOVO_DIR - installation directory
- HPC_REPDENOVO_BIN - executable directory
- HPC_REPDENOVO_DOC - documentation directory
- HPC_REPDENOVO_EXE - examples directory
- HPC_REPDENOVO_CONF - sample config directory
Citation¶
If you publish research that uses repdenovo you have to cite it as follows:
Categories¶
biology, phylogenetics