Redundans¶
Description¶
Redundans pipeline assists an assembly of heterozygous genomes. Program takes as input assembled contigs, sequencing libraries and/or reference sequence and returns scaffolded homozygous genome assembly. Final assembly should be less fragmented and with total size smaller than the input contigs. In addition, Redundans will automatically close the gaps resulting from genome assembly or scaffolding.
Environment Modules¶
Run module spider redundans to find out what environment modules are available for this application.
Environment Variables¶
- HPC_REDUNDANS_DIR - installation directory
- HPC_REDUNDANS_BIN - executable directory
- HPC_REDUNDANS_DOC - documentation directory
- HPC_REDUNDANS_EXE - examples directory
Citation¶
If you publish research that uses Redundans you have to cite it as follows:
Categories¶
biology, phylogenetics