recycler¶
Description¶
Recycler is a tool that can extract complete circular contigs from sequence data of isolate microbial genomes, plasmidome and metagenome sequence data.
Environment Modules¶
Run module spider recycler to find out what environment modules are available for this application.
Environment Variables¶
- HPC_RECYCLER_DIR - installation directory
- HPC_RECYCLER_BIN - executable directory
Citation¶
If you publish research that uses recycler you have to cite it as follows:
@article{rozov2017recycler,
title={Recycler: an algorithm for detecting plasmids from de novo assembly graphs},
author={Rozov, Roye and Brown Kav, Aya and Bogumil, David and Shterzer, Naama and Halperin, Eran and Mizrahi, Itzhak and Shamir, Ron},
journal={Bioinformatics},
volume={33},
number={4},
pages={475--482},
year={2017},
publisher={Oxford University Press}
Categories¶
biology, sequencing