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RagTag

Description

ragtag website

RagTag is a collection of software tools for scaffolding and improving modern genome assemblies. Tasks include:

Environment Modules

Run module spider ragtag to find out what environment modules are available for this application.

Environment Variables

  • HPC_RAGTAG_DIR - installation directory
  • HPC_RAGTAG_BIN - executable directory

Citation

If you publish research that uses ragtag you have to cite it as follows:

Alonge, M., Soyk, S., Ramakrishnan, S., Wang, X., Goodwin, S., Sedlazeck, F. J., Lippman, Z. B., & Schatz, M. C. (2019). RaGOO: fast and accurate reference-guided scaffolding of draft genomes. Genome Biology, 20(1), 224. https://doi.org/10.1186/s13059-019-1829-6

Categories

phylogenetics