RaGOO¶
Description¶
A tool to order and orient genome assembly contigs via Minimap2 alignments to a reference genome.
Environment Modules¶
Run module spider ragoo to find out what environment modules are available for this application.
Environment Variables¶
- HPC_RAGOO_DIR - installation directory
- HPC_RAGOO_BIN - executable directory
Citation¶
If you publish research that uses ragoo you have to cite it as follows:
Alonge, M., Soyk, S., Ramakrishnan, S., Wang, X., Goodwin, S., Sedlazeck, F. J., Lippman, Z. B., & Schatz, M. C. (2019). RaGOO: fast and accurate reference-guided scaffolding of draft genomes. Genome Biology, 20(1), 224. https://doi.org/10.1186/s13059-019-1829-6
Categories¶
phylogenetics