radorgminer¶

Description¶

The RADOrgMiner pipeline is designed to genotype sequence tags found in reduced genomic complexity libraries that originate from the organellar genome(s).

Environment Modules¶

Run module spider radorgminer to find out what environment modules are available for this application.

Environment Variables¶

HPC_RADORGMINER_DIR - installation directory
HPC_RADORGMINER_BIN - executable directory

Citation¶

If you publish research that uses radorgminer you have to cite it as follows:

Levente Laczkó, Sándor Jordán, Gábor Sramkó. A magnet to draw a bright needle out from the haystack -- RADOrgMiner, an automated pipeline to genotype organellar reads from RADseq data. Authorea preprint. September 25, 2021.DOI: 10.22541/au.163255933.36686159/v1

Categories¶

genomics, biology, sequencing