RADICAL¶

Description¶

RADICAL = Random Addition Concatenation Analysis

Concatenates randomly selected gene partitions and builds phylogenetic trees (MP with PAUP*/ML with RAxML) to examine tree-to-tree agreement of the concatenation path. Also calculates ML support per node and partition. See Narechania et al. (2011 Genome Biol Evol).

Environment Modules¶

Run module spider radical to find out what environment modules are available for this application.

Environment Variables¶

HPC_RADICAL_DIR - installation directory
HPC_RADICAL_BIN - executable directory

Additional Usage Information¶

The radical/0.2 code is preset for using 2 RAxML threads, so the batch job resource request must be in the form of nodes=1:ppn=2. There is no PAUP option.

Categories¶

biology, genomics