quantisnp¶
Description¶
QuantiSNP is designed to detect rare or de novo copy number alterations in normal DNA samples.
Environment Modules¶
Run module spider quantisnp to find out what environment modules are available for this application.
Environment Variables¶
- HPC_QUANTISNP_DIR - installation directory
Citation¶
If you publish research that uses quantisnp you have to cite it as follows:
Colella, S., Yau, C., Taylor, J. M., Mirza, G., Butler, H., Clouston, P., Basset, A. S., Seller, A., Holmes, C., & Ragoussis, J. (2007). QuantiSNP: an Objective Bayes Hidden-Markov Model to detect and accurately map copy number variation using SNP genotyping data. Nucleic Acids Research, 35(6), 2013-2025. https://doi.org/10.1093/nar/gkm076
Categories¶
biology, genomics