QAPA¶
Description¶
RNA-seq Quantification of Alternative Polyadenylation (QAPA) Analysis of alternative polyadenylation (APA) from RNA-seq data (human and mouse). QAPA consists of two main components: Extraction and annotation of 3 UTR sequences from gene models Calculation of relative usage of alternative 3 UTR isoforms based on transcript-level abundance.
Environment Modules¶
Run module spider qapa to find out what environment modules are available for this application.
Environment Variables¶
- HPC_QAPA_DIR - installation directory
- HPC_QAPA_BIN - executable directory
Citation¶
If you publish research that uses qapa you have to cite it as follows:
Categories¶
phylogenetics