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QAPA

Description

qapa website

RNA-seq Quantification of Alternative Polyadenylation (QAPA) Analysis of alternative polyadenylation (APA) from RNA-seq data (human and mouse). QAPA consists of two main components: Extraction and annotation of 3 UTR sequences from gene models Calculation of relative usage of alternative 3 UTR isoforms based on transcript-level abundance.

Environment Modules

Run module spider qapa to find out what environment modules are available for this application.

Environment Variables

  • HPC_QAPA_DIR - installation directory
  • HPC_QAPA_BIN - executable directory

Citation

If you publish research that uses qapa you have to cite it as follows:

Ha, K. C. H., Blencowe, B. J., & Morris, Q. (2018). QAPA: a new method for the systematic analysis of alternative polyadenylation from RNA-seq data. Genome Biology, 19(1), 45. https://doi.org/10.1186/s13059-018-1414-4

Categories

phylogenetics