pyScenic¶

Description¶

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

Environment Modules¶

Run module spider pyscenic to find out what environment modules are available for this application.

Environment Variables¶

HPC_PYSCENIC_DIR - installation directory
HPC_PYSCENIC_BIN - executable directory

Categories¶

transcriptomics