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pypaftol

Description

pypaftol website

pypaftol (or paftools) is Python module for PAFTOL that provides functionality for recovery and data analysis of target capture data in the PAFTOL Project. Some of this functionality will be applicable and hopefully useful beyond PAFTOL, e.g. for processing HybSeq data in general. Functionality can be accessed either via the paftools script or the Python API.

For usage, use the command:

paftools -h

Environment Modules

Run module spider pypaftol to find out what environment modules are available for this application.

Environment Variables

  • HPC_PYPAFTOL_BIN - executable directory

Additional Usage Information

To load Pypaftol, run the following commands:

$ module load pypaftol

$ paftools [options]

For usage information, run the following command:

$ paftools --help

Categories

biology, ngs, phylogenetics