PyHIST

Description

pyhist website

PyHIST is a Histological Image Segmentation Tool: a lightweight semi-automatic command-line tool to extract tiles from histopathology whole image slides. It is intended to be an easy-to-use tool to preprocess histological image data for usage in machine learning tasks.

Environment Modules

Run module spider pyhist to find out what environment modules are available for this application.

Environment Variables

• HPC_PYHIST_DIR - installation directory
• HPC_PYHIST_BIN - executable directory

Categories

biology, imaging, image_processing