pyfastx¶

Description¶

pyfastx is a Python library for fast and efficient processing of FASTA and FASTQ files. It provides a simple interface to read and manipulate sequence data, enabling efficient analysis of large genomic datasets.

Environment Modules¶

Run module spider pyfastx to find out what environment modules are available for this application.

Environment Variables¶

HPC_PYFASTX_DIR - installation directory
HPC_PYFASTX_BIN - executable directory

Citation¶

If you publish research that uses pyfastx you have to cite it as follows:

Lianming Du, Qin Liu, Zhenxin Fan, Jie Tang, Xiuyue Zhang, Megan Price, Bisong Yue, Kelei Zhao. Pyfastx: a robust Python package for fast random access to sequences from plain and gzipped FASTA/Q files. Briefings in Bioinformatics, 2021, 22(4):bbaa368.

Categories¶

bioinformatics