purge_haplotigs¶
Description¶
purge_haplotigs is a pipeline to help with curating heterozygous diploid genome assemblies from third-gen long-read sequencing.
Environment Modules¶
Run module spider purge_haplotigs to find out what environment modules are available for this application.
Environment Variables¶
- HPC_PURGE_HAPLOTIGS_DIR - installation directory
- HPC_PURGE_HAPLOTIGS_BIN - executable directory
Citation¶
If you publish research that uses purge_haplotigs you have to cite it as follows:
The pipeline is published at BMC Bioinformatics:
Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies
Categories¶
sequencing, biology