purge_haplotigs¶

Description¶

purge_haplotigs is a pipeline to help with curating heterozygous diploid genome assemblies from third-gen long-read sequencing.

Environment Modules¶

Run module spider purge_haplotigs to find out what environment modules are available for this application.

Environment Variables¶

HPC_PURGE_HAPLOTIGS_DIR - installation directory
HPC_PURGE_HAPLOTIGS_BIN - executable directory

Citation¶

If you publish research that uses purge_haplotigs you have to cite it as follows:

Roach, M. J., Schmidt, S. A., & Borneman, A. R. (2018). Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies. BMC Bioinformatics, 19, 460. https://doi.org/10.1186/s12859-018-2485-7

Categories¶

sequencing, biology