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Pseudofinder

Description

pseudofinder website

Pseudofinder is a bioinformatics tool that detects pseudogene candidates from annotated genbank files of bacterial and archaeal genomes.

Environment Modules

Run module spider pseudofinder to find out what environment modules are available for this application.

Environment Variables

  • HPC_PSEUDOFINDER_DIR - installation directory
  • HPC_PSEUDOFINDER_BIN - executable directory

Citation

If you publish research that uses pseudofinder you have to cite it as follows:

Syberg-Olsen MJ, Graber AI, Keeling PJ, McCutcheon JP, Husnik F. Pseudofinder: detection of pseudogenes in prokaryotic genomes, bioRxiv 2021, doi: https://doi.org/10.1101/2021.10.07.463580.

Categories

phylogenetics