prottest3¶
Description¶
ProtTest is a bioinformatic tool for the selection of best-fit models of aminoacid replacement for the data at hand.
Environment Modules¶
Run module spider prottest3 to find out what environment modules are available for this application.
Environment Variables¶
- HPC_PROTTEST3_DIR - installation directory
- HPC_PROTTEST3_BIN - executable directory
Additional Usage Information¶
This is a GUI software. Please visit our GUI Programs Help Page for more detailed documentation.
Citation¶
If you publish research that uses prottest3 you have to cite it as follows:
Darriba D, Taboada GL, Doallo R, Posada D. ProtTest 3: fast selection of best-fit models of protein evolution. Bioinformatics, 27:1164-1165, 2011
In addition, given that ProtTest uses Phyml intensively, we encourage users to cite this program as well when using ProtTest:
Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 52: 696-704. Phyml
Categories¶
biology