prottest3¶
Description¶
ProtTest is a bioinformatic tool for the selection of best-fit models of aminoacid replacement for the data at hand.
Environment Modules¶
Run module spider prottest3 to find out what environment modules are available for this application.
Environment Variables¶
- HPC_PROTTEST3_DIR - installation directory
- HPC_PROTTEST3_BIN - executable directory
Additional Usage Information¶
This is a GUI software. Please visit our GUI Programs Help Page for more detailed documentation.
Citation¶
If you publish research that uses prottest3 you have to cite it as follows:
Darriba, D., Taboada, G. L., Doallo, R., & Posada, D. (2011). ProtTest 3: fast selection of best-fit models of protein evolution. Bioinformatics, 27(8), 1164-1165. https://doi.org/10.1093/bioinformatics/btr088
In addition, given that ProtTest uses Phyml intensively, we encourage users to cite this program as well when using ProtTest:
Guindon, S., & Gascuel, O. (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology, 52(5), 696-704. https://doi.org/10.1080/10635150390235520
Categories¶
biology