ProtExcluder

Description

protexcluder website

ProtExcluder is designed to exclude the portion of DNA sequence (as well as certain length of the flanking sequence – given by the user, default = 50 bp) matching subjects in a protein database.

Environment Modules

Run module spider protexcluder to find out what environment modules are available for this application.

Environment Variables

• HPC_PROTEXCLUDER_DIR - installation directory
• HPC_PROTEXCLUDER_BIN - executable directory

Citation

If you publish research that uses protexcluder you have to cite it as follows:

Campbell, M. S., Law, M., Holt, C., Stein, J. C., Moghe, G. D., Hunagel, D. E., Lei, J., Achawanantakun, R., Jiao, D., Lawrence, C. J., Ware, D., Shiu, S-H., Childs, K. L., Sun, Y., Jiang, N, Yandell, M. 2014. MAKER-P: a tool-kit for the rapid creation, management, and quality control of plant genome annotations. Plant Physiology 164 513-524.

Categories

biology, phylogenetics