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ProtExcluder

Description

protexcluder website

ProtExcluder is designed to exclude the portion of DNA sequence (as well as certain length of the flanking sequence – given by the user, default = 50 bp) matching subjects in a protein database.

Environment Modules

Run module spider protexcluder to find out what environment modules are available for this application.

Environment Variables

  • HPC_PROTEXCLUDER_DIR - installation directory
  • HPC_PROTEXCLUDER_BIN - executable directory

Citation

If you publish research that uses protexcluder you have to cite it as follows:

Campbell, M. S., Law, M., Holt, C., Stein, J. C., Moghe, G. D., Hunagel, D. E., Lei, J., Achawanantakun, R., Jiao, D., Lawrence, C. J., Ware, D., Shiu, S-H., Childs, K. L., Sun, Y., Jiang, N., & Yandell, M. (2014). MAKER-P: a tool-kit for the rapid creation, management, and quality control of plant genome annotations. Plant Physiology, 164(2), 513-524. https://doi.org/10.1104/pp.113.230144

Categories

biology, phylogenetics