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Proovread

Description

proovread website

Large scale high-accuracy BioPac correction through iterative short read consensus.

Environment Modules

Run module spider proovread to find out what environment modules are available for this application.

Environment Variables

  • HPC_PROOVREAD_DIR - installation directory
  • HPC_PROOVREAD_BIN - executable directory
  • HPC_PROOVREAD_CONF - default pipeline configuration file For advanced usage copy the configuration file from $HPC_PROOVREAD_CONF to your working directory and adjust as needed for the analysis at hand.

Additional Usage Information

For advanced usage copy the configuration file from $HPC_PROOVREAD_CONF to your working directory and adjust as needed for the analysis at hand.

Citation

If you publish research that uses proovread you have to cite it as follows:

Hackl, T., Hedrich, R., Schultz, J., & Förster, F. (2014). proovread: large-scale high-accuracy PacBio correction through iterative short read consensus. Bioinformatics, 30(21), 3004-3011. https://doi.org/10.1093/bioinformatics/btu392

Categories

biology, genomics, ngs