Prokka

Description

prokka website

Prokka is a software tool for the rapid annotation of prokaryotic genomes. A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core computer, and scales well to 32 core SMP systems. It produces GFF3, GBK and SQN files that are ready for editing in Sequin and ultimately submitted to Genbank/DDJB/ENA.

Environment Modules

Run module spider prokka to find out what environment modules are available for this application.

Environment Variables

• HPC_PROKKA_DIR - Installation directory
• HPC_PROKKA_BIN - Executable directory

Citation

If you publish research that uses prokka you have to cite it as follows:

Seemann T. Prokka: rapid prokaryotic genome annotation. Bioinformatics. 2014 Jul 15;30(14):2068-9. PMID:24642063

Categories

biology, genomics, assembly