ProbABEL¶
Description¶
ProbABEL - Genome-wide association analysis of imputed data. ProbABEL software package is used for the analysis of genome-wide imputed SNP data and quantitative, binary, and time-till-event outcomes under linear, logistic, and Cox proportional hazards models, respectively. For quantitative traits, the package also implements a fast two-step mixed model-based score test for association in samples with differential relationships, facilitating analysis in family-based studies, studies performed in human genetically isolated populations and outbred animal populations.
Environment Modules¶
Run module spider probabel to find out what environment modules are available for this application.
Environment Variables¶
To run: copy the $HPC_PROBABEL_CONF sample file to your working directory and modify it before running probabel. E.g. 'cp $HPC_PROBABEL_CONF .' * HPC_PROBABEL_DIR - installation directory * HPC_PROBABEL_BIN - executable directory * HPC_PROBABEL_CONF - path to the sample configuration file
Categories¶
genomics